7 datasets tagged as the tag “Biological network”.
7 datasets.
A Reactome biological pathway database dataset of 6,327 nodes and 147,547 edges, collected by Reactome consortium. Each record contains directed: False, weighted: False, signed: False. Protein-protein interaction network from the Reactome pathway database — large-scale biological network.. Suitable for biological network analysis, community detection, protein interaction research.
A Human protein interaction network (Vidal lab) dataset of 3,133 nodes and 6,726 edges, collected by M. Vidal et al.. Each record contains directed: False, weighted: False. Human protein-protein interaction network from the Vidal lab — classic biological network benchmark.. Suitable for biological network analysis, protein interaction research.
A Human protein interaction network (Figeys lab) dataset of 2,239 nodes and 6,452 edges, collected by D. Figeys et al.. Each record contains directed: True, weighted: False. Human protein-protein interaction network from the Figeys lab.. Suitable for biological network analysis, protein interaction research.
A Protein-protein interaction network dataset of 1,870 nodes and 2,277 edges, collected by KONECT. Each record contains directed edges: False, weighted: False, signed: False. This undirected network contains protein interactions contained in yeast. Research showed that proteins with a high degree were more important for the surivial of the yeast than others. A node represents a protein and an edge represents a metabolic interaction between two proteins. The network cont. Suitable for biological network analysis, community detection.
A Human protein interaction network (Stelzl et al.) dataset of 1,706 nodes and 6,207 edges, collected by U. Stelzl et al.. Each record contains directed: True, weighted: False. Human protein-protein interaction network from Stelzl et al. — yeast two-hybrid screening.. Suitable for biological network analysis, protein interaction research.
A C. elegans metabolic network dataset of 453 nodes and 2,040 edges, collected by H. Jeong et al.. Each record contains directed: False, weighted: True, signed: False. Metabolic network of C. elegans — classic biological network benchmark.. Suitable for biological network analysis, community detection, scale-free network research.
A PDZBase protein domain interaction database dataset of 212 nodes and 244 edges, collected by A. Ma'ayan et al.. Each record contains directed: False, weighted: False. PDZ domain protein-protein interaction network from the PDZBase database.. Suitable for biological network analysis, domain interaction research.
